Evolutionary Ecology of
Microorganisms

We study how bacteria evolve, interact and exchange genes — and what these processes mean for antimicrobial resistance, virulence and public health.

Francisco Dionísio Associate Professor with Habilitation
Faculty of Sciences · University of Lisbon

MICROBIAL SYSTEMS 01 / 04
EVOLUTION × ECOLOGY × GENETICS FD / 26
RESEARCH ACROSS MOLECULES, CELLS & POPULATIONS SCROLL TO DISCOVER
01 / ABOUT

A quantitative approach to biological questions.

I am an Associate Professor with Habilitation at the Faculty of Sciences, University of Lisbon. Our research is centered on bacterial evolution and the emergence and spread of antibiotic resistance.

Our work combines laboratory experimentation with computational and mathematical models to investigate how genetic interactions, horizontal gene transfer and ecological context shape evolutionary outcomes.

A complementary line of research explores the human and psychological factors associated with antibiotic use, connecting microbiology to broader public-health questions.

View my ORCID profile
02 / RESEARCH AREAS

Questions that drive our research.

From the dynamics of mobile genetic elements to the ecological and behavioural dimensions of antimicrobial resistance.

01 /

Plasmid biology & horizontal gene transfer

Transmission, persistence and interactions of plasmids, including their role in the spread of bacterial traits.

MOBILE GENETIC ELEMENTS
02 /

Antimicrobial resistance & virulence

Evolutionary and genomic processes shaping antibiotic resistance and the distribution of virulence-associated genes.

BACTERIAL ADAPTATION
03 /

Microbial social evolution

Cooperation, competition, genetic conflict and social interactions in bacterial populations, using experimental and theoretical approaches.

EVOLUTIONARY THEORY
04 /

Antibiotic use & human behaviour

Psychological and social factors associated with antibiotic use and prescription, including research on infancy and family context.

ONE HEALTH & BEHAVIOUR
04 / SCHOLARLY OUTPUT

Publications.

Search and filter the indexed publications and selected additional works included in the attached profiles.

0 records shown / 0 in this curated list

Preprints and book works are listed separately. Some author strings are abbreviated as in the export; check original records for complete metadata.

05 / ACADEMIC LIFE

Research, teaching & mentorship.

My academic work brings together evolutionary microbiology, quantitative methods and training of the next generation of biologists, microbiologists and researchers.

Academic appointments

2023 — present*

Associate Professor with Habilitation
Faculty of Sciences, University of Lisbon

2006 — 2023

Assistant Professor
University of Lisbon

2000

PhD in Microbiology
Université Paris VII Denis Diderot

1995

Five-year degree in Physics Engineering
Instituto Superior Técnico, Lisbon

Teaching & academic service

Teaching at bachelor's, master's and doctoral levels, including bioinformatics, evolution of microorganisms, evolutionary biology in medicine and computational approaches to biology.

I have coordinated the MSc in Molecular Biology and Genetics (2019-2025), following a period coordinating the MSc in Bioinformatics and Computational Biology (2010–2019).

Experience supervising MSc and PhD research projects.

06 / GET IN TOUCH

Let's talk
science.

Interested in collaboration, research discussions or academic exchange? Get in touch.

fadionisio@ciencias.ulisboa.pt